March 14, 2008

How Appropriate: It's Pi Day and I've Been Going in Circles

Today, I was finally going to get done with moving to Worcester. I know, I know, I should have done this awhile back but I so hate dealing with bureaucracy and so like doing just about anything that isn't dealing with bureaucracy that today, finally, I was going to transfer the registration on my car to this state. No big deal, right?

Wrong. Because, you see, bureaucracy is involved and, in particular, ass-covering bureaucracy.

I found out today that somehow, between the time I paid my car loan off about four years ago and this morning that the state of Florida's DMV screwed up something with their records. They apparently lost some data and never fixed the problem or fixed it wrong. I was, of course, caught in this lovely techno-bureaucratic cock-up. I found out today that, according to the state of Florida, the large financial corporation that issued my car loan had never told Florida that my loan had been paid off and the title transferred to me. At least that's what shows in Florida's records.

Was I a little surprised by this? You bet! How did I find out it was Florida's screw-up? When I called the large financial corporation and they pulled up my record, the rep on the line with me immediately said in a low-pitched voice, "Oh. You're from Florida. We've been getting numerous calls from Florida. I bet you need a lien release, right?"

Well, yes, that's exactly it. Apparently I'm not the only one this has happened to. The rep knew what I needed before I asked based on where I had been living when I paid off my loan. Not good.

So, because of Florida's screw-up, my former lien holder has to send me the lien release. I then have to send that to Florida so that they can update their records. Then, and only then, I can transfer my car registration to Massachusetts. This is despite the fact that the Florida DMV sent me a title in 2004 that said that the car was mine-all-mine because I had paid off my loan.

There really is something in the water down there.

Sphere: Related Content

March 13, 2008

A Letter to Sally Kern: If Tucker Should Read This

This was written by Tucker who, at 17 or 18 years in this life, has developed more compassion and common sense than a hatemonger like Sally Kern will ever develop over the course of however long they malinger on the face of this planet. If you are not moved at least a little bit by what he's written in response to Kern's venom, please check that you have a pulse.

Rep Kern:

On April 19, 1995, in Oklahoma City a terrorist detonated a bomb that killed my mother and 167 others. 19 children died that day. Had I not had the chicken pox that day, the body count would've likely have included one more. Over 800 other Oklahomans were injured that day and many of those still suffer through their permanent wounds.

That terrorist was neither a homosexual or was he involved in Islam. He was an extremist Christian forcing his views through a body count. He held his beliefs and made those who didn't live up to them pay with their lives.

As you were not a resident of Oklahoma on that day, it could be explained why you so carelessly chose words saying that the homosexual agenda is worst than terrorism. I can most certainly tell you through my own experience that is not true. I am sure there are many people in your voting district that laid a loved one to death after the terrorist attack on Oklahoma City. I kind of doubt you'll find one of them that will agree with you.

I was five years old when my mother died. I remember what a beautiful, wise, and remarkable woman she was. I miss her. Your harsh words and misguided beliefs brought me to tears, because you told me that my mother's killer was a better person than a group of people that are seeking safety and tolerance for themselves.

As someone left motherless and victimized by terrorists, I say to you very clearly you are absolutely wrong.

You represent a district in Oklahoma City and you very coldly express a lack of love, sympathy or understanding for what they've been through. Can I ask if you might have chosen wiser words were you a real Oklahoman that was here to share the suffering with Oklahoma City? Might your heart be a bit less cold had you been around to see the small bodies of children being pulled out of rubble and carried away by weeping firemen?

I've spent 12 years in Oklahoma public schools and never once have I had anyone try to force a gay agenda on me. I have seen, however, many gay students beat up and there's never a day in school that has went by when I haven't heard the word **** slung at someone. I've been called gay slurs many times and they hurt and I am not even gay so I can just imagine how a real gay person feels. You were a school teacher and you have seen those things too. How could you care so little about the suffering of some of your students?

Let me tell you the result of your words in my school. Every openly gay and suspected gay in the school were having to walk together Monday for protection. They looked scared. They've already experienced enough hate and now your words gave other students even more motivation to sneer at them and call them names. Afterall, you are a teacher and a lawmaker, many young people have taken your words to heart. That happens when you assume a role of responsibility in your community. I seriously think before this week ends that some kids here will be going home bruised and bloody because of what you said.

I wish you could've met my mom. Maybe she could've guided you in how a real Christian should be acting and speaking.

I have not had a mother for nearly 13 years now and wonder if there were fewer people like you around, people with more love and tolerance in their hearts instead of strife, if my mom would be here to watch me graduate from high school this spring. Now she won't be there. So I'll be packing my things and leaving Oklahoma to go to college elsewhere and one day be a writer and I have no intentions to ever return here. I have no doubt that people like you will incite crazy people to build more bombs and kill more people again. I don't want to be here for that. I just can't go through that again.

You may just see me as a kid, but let me try to teach you something. The old saying is sticks and stones will break your bones, but words will never hurt you. Well, your words hurt me. Your words disrespected the memory of my mom. Your words can cause others to pick up sticks and stones and hurt others.

Sincerely

Tucker
If you should happen to see this, Tucker, good luck to you in college and by all means consider Massachusetts in your plans. This state isn't perfect by any stretch and sure, we have a share of morons who think like Sally Kern. We're also the only state in the country that allows gay marriage, if that's any indicator to you of how things work here. I live in what seems to be considered one of the more conservative parts of the state, but compared to what I've encountered in having lived in many places around the US I would have to say that it's still a place where people have generally figured out how to live-and-let-live. We certainly have more than our share of excellent universities, too. Having read your letter, I've no doubt you'll ace the essay portion of your application and I bet you're a hell of a good student.

When I heard Kern's comments, I have to be honest; I didn't think of the bombing right away. Tucker is 100% correct. For Kern to make such statements in a place where people are so recently and so intimately acquainted with the reality of terrorism takes her horrid bile one step even further into a realm of hatefulness that can be traversed only by the lowest and most selfish people in this world upon which, one way or another, we really ought to be figuring out how to live together. Kern dwells in a reeking darkness shared by a select few who use their public influence to call for evils to be visited upon fellow human beings for no reason other than their own distastes. Kern lives in a hell of her own making that she shares with people like Donald Wildmon and Pat Robertson — people who believe in a deity so fervently that they think they can give marching orders on their behalf and call down divine fury if they can just pray hard enough for the destruction of their "enemies."

You know what? There is a "gay agenda." It consists of wanting the very same things out of life that everyone who doesn't happen to be gay wants. That people like Kern and Wildmon can turn the insistence that everyone deserves the same rights, privileges and protections under the law into some scheme to overthrow civilization in favor of raping two year olds tells us much, much more about what lurks in the hearts of these foul and pathetic creatures than it tells us about the motivations of people who, whether through a coincidence of genetics or development or choice, for that matter, prefer members of their own gender to those of the other gender as lovers. That this makes any difference at all to anyone never fails to boggle my mind. It does nothing to anyone, it means nothing at all to anyone, except those involved.

I've had some experience with the "gay agenda." I have known an uncounted but surely large number of gay men and women who were in and out of all sorts of relationships in the time I knew them — just like the "straight" people I've known. Some were good people, I thought, some were people I wouldn't want trust or even associate with. Some were honest, kind, caring people and some were devious, thieving miscreants who gladly bit the hands that fed them. In short, gay people as a whole are no different, in my experience, from straight people as a whole or, for that matter, people who had no interest in sex at all (yes, I have met a few of those). They all wanted the same things out of life that I wanted; a comfortable living, to work, to live with their partners — in some cases in a legally-protected relationship — and to be allowed to contribute whatever talents they had to society, or to be greedy, selfish pigs who cared nothing for others and were engaged in an endless quest for self-gratification. Not a one, as far as I ever knew, wanted to rape two year olds or commit acts of terrorism or turn their country over to Al Qaida.

I knew two same-sex couples especially well. One was a couple of gents who had been together for better than 15 years when I first met them. One of them gave me one of the biggest breaks I ever had in my life. He recognized some talent in me and gave me an opportunity to exercise it and make a very good living in the process. He was one of the kindest people I have ever known. He and his partner were deeply in love; by all rights, they should have been allowed to marry if they so desired, although I don't know if they wanted to bother with it. When not working on their businesses, they volunteered to work on human rights issues. They were committed not only to each other but to the society in which they live. They were good people. In light of all this, should anyone care that they happened to be two men instead of a man and a woman, or two women, or what have you? I doubt either one of them ever did intentional harm to another human being in their lives.

A very good man, c. 1963I knew another couple of gents who had been together for more than 40 years. They lived in the same apartment on Polk Street for at least 30 of those years. One was an author and an artist who spoke at least seven languages and understood the most esoteric philosophies and the history of Western culture as few people I have ever known. They were dedicated to one another until the day that this author died, followed just over a year later by his lifelong partner. Even without a marriage contract, they shared their lives in exactly the same way that any couple might share their lives together. They stood by each other through all of the travails that we humans face in our lives and then a few more because of the simple and meaningless circumstance that they happened to be two males. Their commitment was no less for it. They were kindly, even jovial, characters who delighted in providing a free education to whomever wanted one and not once — not ONCE — did they ever ask for anything in return. These men were worse than terrorists how, exactly? Not only were they good people, they were far better people than Sally Kern, Donald Wildmon, Pat Robertson or Fred Phelps can ever hope to become. That latter group of insidious toxins that infect our society should have counted themselves blessed if such people as these four has deigned to spit upon them.

I am 42 years old. In all of that time, at least half of a lifetime in which I have lived in places like New York City and San Francisco (27 of those 42 years combined, in fact), in all of the times I have found myself wandering through The Castro or Greenwich Village, never once did I wish for a Sally Kern or a Fred Phelps to come and protect me from gay people. In the years since I first became aware of the existence of individuals like Kern and Phelps and Robertson, though, I have often hoped for someone who could protect me from them. People who want to love one another and be left alone will never be a threat to society. The sowers of discord and purveyors of hatred always have been and always will be.

If I were God, I would have long since prepared a sort of Moroccan Feast of these people. If I were Emperor of the Universe, letters to Pat Robertson would need be addressed to Fred Phelps' rectum. I suspect that they would be happier with that arrangement, truth be told.

If Tucker should read this, thanks for being so eloquent, for writing that letter that was such a threat to Sally "The Symptom" Kern that a cop had to stop you from delivering it to her office. Whatever your beliefs might be, I would prefer a million of you to be in this world than even one tenth of that vile hag who is beneath your contempt in every way.

A hyphal tip, too, to Reverend Big Dumb Chimp, in whose blog I first saw this.

Sphere: Related Content

Feral Bullshit's Day Out: Florida Legislators Lobbied with Expelled in Tallahassee

Ben Stein and Casey Luskin were on hand last night at Tallahassee's Challenger Learning Center for an exclusive screening of the anti-evolution propaganda film Expelled. Of course, so were the authors of the so-called Academic Freedom Bill, a piece of proposed legislation intended to undermine Florida's at-long-last-modernized science education standards by creating a proviso to allow dissenting teachers to teach students personal opinions as scientific fact.

The people involved in this effort are unquestionably motivated by religious beliefs. Ronda Storms and Alan Hays, authors of the bill, are members of the fundamentalist First Baptist Church. Casey Luskin is a fellow of the Discovery Institute, an organization perhaps best characterized by the statements of fearless leader William "The Designer of intelligent design is the Christian God" Dembski. While not explicitly endorsing a particular religion, the intent of the bill is to allow for religious instruction disguised as science delivered to students who would, in nearly all circumstances, lack sufficient prior education to know the difference between the two.

Concerns that this screening violates Florida's Sunshine Law, which mandates that discussion of legislation and meetings with lobbyists over the same be conducted in public, were brushed aside:

The House general counsel's office advised members that the private screening of Stein's film does not violate the state's "gift ban" law, because the film company does not have a legislative lobbyist. It also is not subject to be "Government in the Sunshine" law because, Stemberger said, there would be no discussion of the Storms and Hays bills.

Source

Portrait: When Failure Meets IncompetenceWhile it may be true that no such discussion took place during the screening of the film, it does seem that it took place after the film:
Stein, a conservative commentator on CBS best known for his role in "Ferris Bueller's Day Off," scheduled meetings with House Speaker Marco Rubio, R-West Miami, and other legislators to endorse bills by Rep. Alan Hays, R-Umatilla, and Sen. Ronda Storms, R-Brandon.

Source

Meeting with legislators to endorse legislation sounds a lot like lobbying to me.

The question about the Academic Freedom Bill being asked is whether it permits for teaching Creationism as science in science classrooms. It does so without actually mentioning Creationism or its weaselier sibling Intelligent Design by name, and it does it by allowing for something called "any scientific theory" to be taught. It doesn't mention how to recognize a scientific theory, however, reducing it to whatever someone thinks might be one, particularly when that consists of an imagined scientific debate — even when the debate isn't taking place within a scientific discipline but instead is a political, social, or religious contention.
Asked whether intelligent design qualifies as "scientific," Storms was more circumspect. Anything that "legitimately provides for a scientific critique of the theory of evolution" should be permitted for discussion, she said.

Source

Orlando attorney John Stemberger, head of the Florida Family Policy Council, and Casey Luskin, an attorney and program officer for the Center for Science and Culture at the Seattle-based Discovery Institute, said the pending legislation would not permit teaching of religious theory in public schools. They said, however, that teachers and students need protection from being discriminated against for questioning evolution or advancing their own beliefs in other science-based theories.

Source

Note that at no point have Storms, Hays, or anyone else advanced an alternative scientific theory, nor even been able to define what other theory would be protected by this legislation. Instead, let's put this in context: what's being protected here is an imagined right to teach things that are either bad science or not science at all. Whose opinions are being protected, then?

People who haven't been able to get papers published because they failed peer review. Teachers who have taught non-scientific, religious ideas as viable alternatives to the product of real inquiry. In fact, the only thing protected by this is crackpottery. This isn't about debates over the legitimacy of endosymbiosis theory or the frequency of transversions or the extent of epigenetic effects. We aren't talking about people who are attempting to apply their knowledge of skeletal physiology to the question of which extinct organisms were the progenitors of endothermy. What we're talking about, in fact, are those educators who want to assert a role for supernatural, untestable involvement against the force of knowledge gathered by the application of methodological naturalism.
"The answer is no," said John Stemberger, president of the Florida Family Policy Council. "This does not allow the permitting of alternate theories to be taught. It only allows the criticism and the presenting of relevant, objective scientific evidence which criticizes chemical or biological evolution."

That would seem to settle the question. Yet moments later, Casey Luskin, an attorney for the Seattle-based Discovery Institute said that even as he agreed with Stemberger, he personally considers intelligent design to be "scientific information."

All of which raises questions about what qualifies as "science" - and who, ultimately, decides.

Source

The actor, and former speechwriter for Presidents Richard Nixon and Gerald Ford, is preparing to release "Expelled: No Intelligence Allowed," his documentary about scientists and educators who have paid a price professionally for challenging natural selection and other premises of Darwinian evolution.

Some have been denied jobs or tenure; others cannot get their articles published, and many have been subject of ridicule, he said.

Source

Stein's ludicrous comments — mind you, they come from an actor and speechwriter from the Nixon administration, so Stein can't be said to be anything like an authority on any of this — betray a complete opposition to the peer review process. Why are scientific journals peer reviewed at all in Stein's estimation? Why don't they just publish everything submitted to them? The reason, of course, is that just because someone says something, no matter how fervently they might believe it, doesn't make it good science or science at all. In fact, material is refused publication in journals routinely because it's simply incorrect, flawed, or incomplete. A paper based on illegitimate hypotheses shouldn't be published. If Stein were to have his way, every crackpot idea that anyone could dream up would be put on the same footing as legitimate inquiry by finding an outlet in publication. It's impossible enough to keep up with all of the material that passes peer review; adding many times over that amount in sheer junk would swamp all attempts at scholarship. How useless would science education itself become if this were the state of things? But that's exactly what Stein, Luskin, and the authors of the Academic Freedom Bill would like to see. Make no mistake, this isn't just about evolutionary biology, but about science in general. In fact, it's about education in general; under the language of this bill, any belief could be taught in a classroom as if it were as well-founded as real inquiry. Children could get a Sally Kern version of history and sociology, for example, and I don't think it's coincidental that Kern is sponsoring legislation in Oklahoma that bears a good deal of resemblance to the legislation pending in Florida.

This effort by Stein, the Discovery Institute, the First Baptist Church, Hays, Storms and, yes, Sally Kern as well, has nothing to do science and everything to do with social engineering. This is the Wedge Strategy in action, nothing more and nothing less. Thankfully, not everyone is falling for it, not even all of those who attended the screening.
The ambiguity concerns Rep. Kevin Ambler, R-Lutz. "I don't want that rubric to become a subterfuge for teaching faith-based lessons, which really belong in Sunday School."

Source

"I wasn't aware of anybody being penalized for questioning evolution," said [House Minority Leader Dan] Gelber. "The Legislature needs to walk away from this debate. The State Board of Education has addressed it and that's the end of the debate. This is a solution in search of a problem."

Source

People in Florida who are concerned with the students of that state receiving a well-founded, useful education in the sciences — and more generally — would do well to listen to Barry Boerner, president of the Tallahassee Scientific Society, in his letter to the editor appearing in the Tallahassee Democrat.
...Reviewers who have seen this film, which is set for general release next month, conclude that it is a baseless, scurrilous attack on science. On the basis of these reviews and the film's lengthy trailer, we concur.

We feel that this event runs counter to the CLC's mission "to foster long-term interest in math, science and technology; create positive learning experiences; and motivate students to pursue careers in these fields."

When we asked the CLC to explain why such a film would be allowed , we were told that in renting its facilities, the center is bound by guidelines that discriminate only on the basis of whether a proposed activity is "pornographic, exceptionally violent or illegal."

We feel that such guidelines beg for review. Under these conditions, a nonpornographic, nonviolent showing of a movie "proving" the genetic inferiority of blacks, just for one egregious example, would be acceptable to the CLC...
I would go one step further. The directorate of the Challenger Learning Center has, by allowing this film to be shown in their facility, has utterly failed in its mission and should either do the honorable thing and resign or else be removed from their posts. In a private email from someone close to the center, I have been informed of the following:
As you can see they had previously consulted their lawyers about the private showing, who advised that they would have no legal basis for refusing the rental of their theater even though they did not like the material to be presented. Whereas the programs they themselves produce must follow certain guidelines, only blatantly offensive presentations are prohibited by private showings.
By any standard, attempts to link evolutionary biologists to the Holocaust qualify as "blatantly offensive" in much the same way that Boerner's example is "blatantly offensive." Regardless of what attorneys may have said, someone charged with fulfilling the CLC's mission should have stood up to this. Attorneys are not the arbiters of conscience and any lawsuit that resulted from Michelle Personnette and Norman Thagard demonstrating the possession of a spine in the face of this egregious attack on science would have been met with widespread support in fighting it. Can you imagine a world in which people like Martin Luther King, Jr. and Elizabeth Cady Stanton had been cowed into non-action by the threat of a lawsuit? "Oh, we can't march on Selma. The governor of Alabama might sue us." "Forget about women's suffrage; we might get sued." Cowardice will lose every time; at this unfortunate point in our cultural history, we need leaders to insure that America isn't plunged into a pre-scientific darkness. The directors of the CLC clearly aren't the right people for their jobs at this time and should be replaced with someone willing to do what needs to be done "to foster long-term interest in math, science and technology; create positive learning experiences; and motivate students to pursue careers in these fields."

Sphere: Related Content

March 12, 2008

Being Productive

All in all, today has been productive enough that I feel I can take a little break and write something in the afternoon. I haven't had much time for blogging in the past few days. Things have been very busy in the time since I came back from New York.

Still, I started the morning by meeting with and securing the last member of my committee. I got what I think will be some valuable help from her regarding sources on beetle-related entomology that's already been fed into my outline toward a full-fledged research proposal.

As things turned out, that couldn't have come a moment too soon. The good folks at Massachusetts DCR wanted something like a proposal from me to append to the special use permit (AKA a Memorandum of Agreement) that will allow me to legally collect specimens at Wachusett. I have the draft of the MOA on my desk as I write this and the terms certainly look right. I should be meeting with several of the DCR's authorized representatives next week to go over the general ground rules and finalize everything. Then I can start collecting, just in time for Spring.

Of course, getting my proposal into shape wasn't helped by a blackout that hit just as I was on a roll. As a result, I lost a big chunk of work that I thought I'd been fortunate enough to put into the thing in a very short time. I was between autosaves in MS Word and lost a whole Methods outline. Bleah. I had to step away from this machine, have a smoke, and then start over again.

Next up, I think, is getting started on a review paper about Cordyceps symbiosis and phylogeny. I've got a fat pile of research papers to wade through and narrow down so that my paper will ultimately be 10-20 pages. Oddly enough, most of the stuff on Cordyceps out there is more about biochemistry than symbiology or even general ecology. I think I should be able to cobble together 6 or 8 pertinent papers for review, though. I haven't looked for citations from the Spatafora lab's website yet, which might have been a good place to start now that I think about it.

OK, enough break. Back to work.

Sphere: Related Content

100 Million Year Old Feathers Found in French Amber

100 million year old feathers in amber; photo from National GeographicSeven filamentous feathers have been found in amber thought to be approximately 100 million years old. The stratum in which this amber is preserved lies immediately above a layer from which teeth belonging to a theropod dinosaur that has been believed to be feathered based on previous specimens. It's worth noting that the fossils in this case post-date Archaeopteryx by about fifty million years, so these feathers probably aren't from the common ancestor of the dinosaur-bird lineage, but it is a distinct possibility that the organism in question is a direct descendant of the organisms that initially gave rise to that line. It is also possible that the feathers, while themselves rather simple, may represent a reduced form that was ancestrally more like the feathers we see in birds capable of flight. The feathers in this amber lack the structure necessary to support flight, but we also see feathers like them in modern flightless birds such as ostriches and emus. More investigation will be necessary to establish the identity and evolutionary position of the feathers. In any case, they provide evidence for the state of evolution at a relatively early point in the history of feathers and may well turn out to be the best-preserved examples of feathers from a theropod to date.

Dino-Era Feathers Found Encased in Amber

Seven dino-era feathers found perfectly preserved in amber in western France highlight a crucial stage in feather evolution, scientists report.

The hundred-million-year-old plumage has features of both feather-like fibers found with some two-legged dinosaurs known as theropods and of modern bird feathers, the researchers said.

This means the fossils could fill a key gap in the puzzle of how dinosaurs gave rise to birds, according to a team led by Vincent Perrichot of the University of Kansas's Paleontological Institute.

The find provides a clear example "of the passage between primitive filamentous down and a modern feather," said team member Didier Néraudeau of the University of Rennes in France.

The study team isn't sure yet whether the feathers belonged to a dino or a bird.

But fossil teeth from two dino families thought to have been feathered were excavated from rocks just above the layer that contained the amber, Perrichot said...

Perrichot found the tiny feathers encased in a lump of amber, a fossilized tree resin, in a quarry in the Poitou-Charentes region of France in 2000.

The feathers' central shafts, or rachis, are primitive and most closely resemble down feathers, the study team noted.

The feather filaments, or barbs, had yet to become fully fused at the base and—like modern down—they lacked hooklets known as barbules to hold the filaments together.

Studies suggest primitive feathers first evolved in flightless dinosaurs that generated heat internally and so would have benefited from the insulation that down can provide...

"This most critical step in the evolution of feathers" was suggested by evolutionary theories but had never previously been seen in either modern or fossil feathers, he said.

Team member Néraudeau added that this missing link has been "an argument for creationists and others to reject the theropod-birds lineage and to argue in favor of different origins for theropod feathers and bird feathers.".."

The bird-fossil expert, who was not involved in the study, noted that the newfound feathers are around 50 million years younger than the first known flying bird, Archaeopteryx, which lived about 150 million years ago.

"Obviously this animal [the feathers came from] isn't directly ancestral to anything except later dinosaurs, but it's quite likely that we are seeing aspects of the ancestral [feather structure]," Longrich said in an email...
Coincidentally, I taught a lesson in phylogeny and building trees to my lab class yesterday. To help illustrate the point of how phenotypic characters can be used in tree construction, I showed them some intermediate creatures that could be used (for the purposes of a simple lesson in phylogeny, anyhow) to illustrate what the ancestor at a node might look like. Among these were Tiktaalik, Basilosaurus and, of course, Archaeopteryx. I spent a bit more time on Archaeopteryx because most students are more familiar with birds than amphibians or whales and it was easy to point out the combination of avian and reptilian characters in that organism in a way that students can grasp easily. Everyone knows that birds don't have teeth (except for the ephemeral egg-tooth in some species) and clawed forelimbs (except for the ephemeral claws found on Hoatzin chicks). While I did make sure they understood that Archaeopteryx itself can't be definitively assigned as an ancestor/node leading to modern birds, we can say that it is much more like that ancestor than any of the birds or reptiles we see in the world today and, if not the node itself, at least represents a taxon relatively close to that node. The same could be said for the amphibian and whale "ancestors" used as examples.

About half the students had never heard of Archaeopteryx and not a single one had heard before of Tiktaalik or Basilosaurus. This is the situation among students who all took biology classes in Massachusetts high schools, save for one transplanted Rhode Islander. If this is the situation here, where we are said to have one of the best science education programs of any state in the country, it isn't too hard to puzzle out why there are still people in places like Florida and Alabama, which have not had strong science education programs to date, who can go about believing that there are no "transitional" fossils and hence no evidence for evolutionary processes through time. Those are the ones, generally, who will assert that there's no evidence for macroevolution because they don't see any "half-fish, half-human" fossils.

I think that when my lab section next meets, I'm going to show them the National Geographic photo above and talk a little bit about this recent find. It's pretty cool stuff and I think most of them will find it more interesting than the ensuing lab exercises on single-celled organisms.

Sphere: Related Content

March 11, 2008

Virgin Mary Burns Out Eyeballs: An Amaculate Conception

Just when you've thought you'd heard it all about religious fanaticism the true-believers go that one step further into absurdity. Witness this tale of "woah" from India, where fifty people so far have burned their eyes by staring into the sun in hopes of seeing a reputed image of the Virgin Mary.

50 people looking for solar image of Mary lose sight

At least 50 people in Kottayam district have reportedly lost their vision after gazing at the sun looking for an image of Virgin Mary.

Though alarmed health authorities have installed a signboard to counter the rumour that a solar image of Virgin Mary appeared to the believers, curious onlookers, including foreign travellers, have been thronging the venue of the ‘miracle’.

Yummy stewed eyeballsSt Joseph’s ENT and Eye Hospital in Kanjirappally alone has recorded 48 cases of vision loss due to photochemical burns on the retina. “All our patients have similar history and symptoms. The damage is to the macula, the most sensitive part of retina. They have developed photochemical, not thermal, burns after continuously gazing at the sun,” Dr Annamma James Isaac, the hospital’s ophthalmologist, said...

Though people have been flocking to the “blessed land” - hastily christened Rosa Mystica Mountain - for long, the mad rush for the image in the sky began a week ago.

There are quite a few people still seeking the miracle, despite the experiences of their unfortunate predecessors and strict health warnings against gazing at the sun with the naked eye.

“The patients show varying degrees of severity. They are mostly girls in 12-26 age group. Our youngest patient is 12 and the oldest 60. Most of them were looking at the sun between 2 and 4 pm, when UV1 and UV2 rays are harshest,” Dr James Isaac said. He added that they could identify the problem as solar retinopathy because they were aware of the local sensation.

“Most patients may hopefully improve their vision. But there may be long-term effects on the retina,” he added.
What does it take for belief to overwhelm reason to the extent that one goes blind? I'm used to asking that question as a metaphor, but apparently the answer can be very literal.

Hyphal tip to Jeff of Wormtown Taxi for the lead on this story.

Sphere: Related Content

A Word on the Adrian Belew Show

Sunday night's Adrian Belew Power Trio show was tremendous. The set list was as shown on his website and perfectly amazing. Belew has spent a lifetime perfecting his craft and it shows. The videos on the sight tell the story in ways I can't put into words other than to say it was a thrill to not only hear Belew's legendary guitar but have the opportunity to see how he makes those sounds. You know, even after watching it at a close enough range that I could see every move of every finger, I still can't tell you. I'm nearly willing to put it down to magic.

It was the musical equivalent of watching an artist take a nuclear blast between his hands and sculpt it into form after form, ranging from soaring seagull to cudgel. Belew's sound can best be described as walking a thin line between order and chaos. The sound is too big, too protean, for one man to control it, but control it he does. There's nobody like Belew.

Belew's companions on the stage were Julie (bass) and Eric (drums) Slick, a couple of amazingly proficient kids whose combined ages are the same as mine and a bit less than Belew's. Nonetheless, neither of them had any problem adding their sounds to that of Belew's guitar. I was particularly impressed with Eric's mastery of the sometimes stuttering and frequently complex rhythms; it was easy to forget that this is a guy who is at the very beginning of what is likely to be a noteworthy musical career. I wish I could say I did anything as well as that when I was Slick's age — either one of them. All I can say about Julie Slick's playing was that by all rights she should have hands twice the size of those she possesses. She did much more with her bass than I'm used to hearing or seeing bass players do; she managed to coax sounds out of her instrument that complimented Belew's crazy, crazy noise.

Seeing Belew after so many years was an experience by itself. He certainly looks different than when I saw him play with the Talking Heads in the early 80's. He certainly looked to be having a good time, though. There was an infectiousness about his demeanor; by the end of the show, my cheekbones hurt from all the smiling. He exuded humor in his manor and his music. There were moments in the show where he produced riffs that literally made me laugh and these were accompanied by a glance at the audience that bore the look of someone who had just delivered the punchline of a joke. This was particularly so during Ampersand and Dinosaur. I can't say I've had the experience of chuckling over great guitar before; I may have laughed at a screw-up before, but never at sounds produced with such technical excellence and manifested intent.

The only downside to the show was the sound system at the Natick Center for the Arts. There were a few occasions during which it seemed like the system just couldn't keep up with Belew's power. The worst of this came during the Trio's encore; the sound got so muddy that I couldn't tell you what the song was. The set list on Belew's site lists Thela Hun Jinjeet; that's a song I've known for years and have on the MP3 player I keep in my car, but if that was the song being played it was lost on me. Belew has a sound that could fill any stadium, though, so it isn't too surprising that both the sound system and the walls at the Center for the Arts seemed ready to crumble at any moment.

Belew and Company have seven more shows to go in this tour, several of which are at small venues. The dates are on Belew's website. If they're not sold out already, go! Even if you don't know who the heck Adrian Belew is, it's worth seeing one of these shows to find out. You've never heard guitar like this. You've never heard anything like this.

Sphere: Related Content

March 10, 2008

A Response to Oklahoma Legislator Sally Kern

Sally "The Symptom" Kern

Click Me


I've tried to come up with some way of phrasing my thoughts about Oklahoma representative Sally Kern's utterly insane, hateful, vile comments about homosexuals being a danger to America graver than terrorism (and Islam, mind you, as if Islam itself were a threat). I realized, though, that the best I could come up with was a suggestion that she lodge her twisted crucifix into the nethermost terminus of her digestive tract and go for a ride on an unpaved road surface in a pickup without shock absorbers.

Sally is just a symptom of a worsening disease in this country, though. She can't be addressed separately from our overall backslide into the Age of Disenlightenment (or Unreason, as Susan Jacoby phrases it in her latest book). I could spend hours addressing that, but if you click on Sally Symptom's photo above, or on this link, you'll find that someone has already written an excellent response. And you can dance to it.

Sphere: Related Content

March 09, 2008

Adrian Belew Tonight

LL and I are headed out in a bit to see the Adrian Belew Power Trio at the Natick Center for the Arts with my adviser. It turns out that he and I have very similar tastes in music.

This is the first concert we've been to since we saw Marcel Khalife back in November and only the second one since waaaaay back when we saw The Cramps in St. Petersburg, Florida. That's when we were living in Tampa — somewhere around four years ago, I guess.

That's kind of pathetic. When we lived in the San Francisco Bay Area, we used to see a lot of shows. Of course, we had a lot more money back then and there was a lot more music in which we were interested. There wasn't much in Tampa Bay and nothing at all while we were in Tallahassee. One good things about living where we do now is that it's close to Boston, a big city and major market, so it gets a lot more of the kind of music we're into. Then again, we're still relatively broke students, too.

Last time I saw Adrian Belew, he was playing live with the Talking Heads while they toured for Remain in Light, or maybe it was Speaking in Tongues. Yes, it's been a very long time!

I wonder if David Byrne will be in the audience tonight. It's possible...

Sphere: Related Content

Catholic Men's Conference in Worcester Gets an Earful of Anthropic Fine-Tuning

I miss out on all the good conferences. I also miss out on some that come across sounding a bit silly to me. Not being Catholic myself, I was unaware that the eighth annual Worcester Diocesan Catholic Men's Conference was being held at the DCU Center yesterday until I read about it in today's Worcester Telegram and Gazette. Bronislaus B. Kush gives us the lowdown on the conference in general, but makes special reference to a talk given by Russell Stannard of the London Open University advocating for the anthropic principle and cosmological fine-tuning. Yes, someone is still trotting that stuff out. Kush's article starts right off with a rather egregious error and never looks back, though, so I'll assume he's simply unaware of not only the inaccuracies in his article but of the fact that the anthropic principle itself is both scientifically unsupported and logically fallacious.

Science fits well in God’s plan
Day focuses on Catholic men


By Bronislaus B. Kush TELEGRAM & GAZETTE STAFF
bkush@telegram.com

Modern science has made such a thorough and compelling case for explaining the universe’s origins that renowned physicist Stephen Hawking, in his best-seller “A Brief History of Time,” bluntly asked, “What place then for a Creator?”

Had the renowned British theorist, known for his contributions to the fields of cosmology and quantum gravity, been at the DCU Center yesterday, he may have gotten a satisfactory answer.
And we're off. In fact, Hawking does address the anthropic principle at some length in A Brief History of Time. For example, he talks specifically about the Strong Anthropic Principle:
According to this theory, there are either many different universes, or many different regions of a single universe, each with its own initial configuration and, perhaps, with its own set of laws of science. In most of these universes the conditions would not be right for the development of complicated organisms; only in the few universes that are like ours would intelligent life develop and ask the question, 'Why is the universe the way we see it?' The answer is simple: if it had been different, we would not be here.
Reporter Kush seems to be unaware of Hawking's several refutations of the fine-tuning argument even though he himself quotes from A Brief History of Time. Perhaps it's been awhile since he read Hawking's book and he's forgotten that Hawking had already considered the answer put forth by Stannard and found it to be quite unsatisfactory.
According to Russell Stannard, a high-energy nuclear physicist from England who lectures around the world about religion and cosmology, God fits in nicely, along with the big bang theory and Charles Darwin’s evolutionary discourse, in explaining how the universe was formed...
The good news here is that nobody is trying to turn these Catholic men into Biblical literalists and that a Catholic conference had no problem with someone advancing real science, even if he does go on to get things wrong by positing supernatural influence based on logical fallacies shortly.
Mr. Stannard is among a growing number of scientists and researchers who theorize that the initial conditions of the universe and the physical constraints alluded to in the basic physical laws might have been fine-tuned to allow for intelligent life.

Believers of the so-called “anthropic principle” hold that the world was preplanned and designed for sentient beings.

That’s because life, as most understand it, could not have come about had there not been an almost perfect confluence of scientific conditions. Advocates of the principle believe that there’s a supreme being in the mix because of the high improbability that such a combination could be attained...
Here's where the fallacies begin. Leaving aside that there really aren't a growing number of scientists who posit supernatural origination for the universe, I'll look instead at the argument regarding probability. It's a common fallacy that the prior probability for the universe being exactly the way it is is a significant condition. We can use a simple analogy with dice to demonstrate in a thought experiment.

Lots of dice needed here...First, we need 100 fair dice. We'll number them sequentially from 1 to 100 and then roll each one to generate a sequence of 100 results, each of which we know beforehand will be between 1 and 6, inclusively. At the end of the process, we'll have a unique sequence of 100 digits. The odds of obtaining that sequence is about 1 in 6.5 x 1077. That's an incredibly tiny probability, far smaller than that of winning the lottery or even of selecting a particular atom from all of the matter in the universe. Nonetheless, there's our sequence of 100 digits staring us in the face. We didn't start out with the intention of getting that sequence, we didn't weight the dice to produce a particular result, and the odds of that sequence existing at all are infinitesimal.

Still, we had an advantage to begin with because there was really a limit to our results based on knowledge of our starting conditions. We know that each digit in our sequence had to be an whole number between 1 and 6. We don't expect any of our dice to come up as an 8 or a 3.4. When it comes to calculating the prior probability of the universe existing as we see it in reality, though, we have no such advantage. We can compare our dice to other dice, but we can't compare our universe to other universes, so to say that gravity could have been different, for example, is meaningless. We don't know that it could have been different, although we might be able to imagine any number of possibilities — and the fact that we can imagine an infinite number of possibilities itself demonstrates that this is a meaningless criterion for consideration in calculating anything about how the universe could have been different. Moreover, even if we did know somehow a way to constrain the prior probabilities, this doesn't necessitate including supernatural causation; we could say how things would be different in this case, but that doesn't give us a teleology, a reason why they would be different based on some intentional act. Now take into account all the other events, all the other physical constants that go into making up a universe and it becomes clear that the chance that we could predict a prior probability correctly makes the result of our dice experiment look like a sure thing. When you get right down to it, there's no way of calculating anything about the probability of the universe being what it is. To do so, as Stannard and other advocates of anthropic design do, is more an exercise in the fantastic than anything mathematically, or even logically, meaningful.

Additionally, since we can't say anything about how things would have turned out differently if things had started from a different set of circumstances at the very beginning of time and space, we certainly can't assume that a different set of physical constants would have resulted in a universe without any intelligent life in it, let alone one without life at all. The fact is that we can't really know that at all; it's not a testable hypothesis because there's no way for us to sample other universes with other physical laws. Just a couple of galaxies out of the billions out thereTo go back to the dice experiment, it would be like trying to calculate the probability for a result without even knowing how many dice were being rolled and how many sides the dice had. If I handed you a very heavy bag and told you that it was filled with dice but didn't tell you how many there were or what the possible results of a roll of each die were, how would you even begin to calculate the probability of getting a particular result from rolling even two of the dice? That's exactly what the anthropic "fine-tuning" argument is attempting to do, though, and that's why it has been so thoroughly discredited. Victor Stenger wrote a very good and much more thorough explanation of the problems with this argument entitled The Anthropic Coincidences: A Natural Explanation in The Skeptical Intelligencer in 1999.

That Kush, and probably a number of the men attending this conference, are impressed by the fact that a physicist is delivering this argument is a little telling on its own. I'm sure Dr. Stannard is a very smart man and good at what he does, but in this case he's just wrong. It's important to examine the content of the argument itself rather than falling victim to an appeal to authority which, I think, may be part of what's going on in Kush's article.
For example, Mr. Stannard argued that the big-bang explosion was of such a magnitude that life could develop on Earth. He said things would have been far different had the explosion been more or less violent.

Many other factors, such as the right degree of gravity and the ability of carbon to form, added to the successful formula of life.

“Everything is so beautifully fitted,” said Mr. Stannard, professor emeritus at London’s Open University, in noting that cosmology studies aren’t necessarily a threat to one’s religious beliefs...
Nothing is a threat to one's religious beliefs if those beliefs are formulated in a way that can accommodate new evidence that might contradict former beliefs. The problem between religion and science, as it were, really boils down to this. Religion as it is commonly formulated in modern America relies on the existence of a set of immutable ideas while science is designed from the outset to change and go wherever the evidence leads. If one applies religious belief to physical phenomena and then refuses to change those beliefs, of course there's going to be a conflict for the believer at some point. Sooner or later, we're going to find out that the earth isn't a disk beneath a hemisphere of stars. The question is whether that matters in the first place, of course. One shouldn't expect science to be an exercise in confirming anyone's beliefs — not even the beliefs of scientists themselves.

When I did an undergraduate study of the relationship between an insect and a fungus, I went in with the belief that there would be some mutually beneficial relationship between the two. Everything I observed superficially seemed to me to indicate that this would be the case. When I performed experiments on the system, however, I couldn't find anything that indicated that the fungus was deriving any benefit at all from the presence of the insect that exploited it. At best, all I could say was that the fungus probably wasn't being significantly harmed in terms of its ability to reproduce. It was a direct contradiction of my belief, but my belief wasn't supported by the evidence that came from reality and so I had two choices: I could have ignored the evidence in favor of maintaining my belief, or I could revise my belief in light of the evidence. Granted, this is a small matter in the grand scheme of things (unless, of course, you happen to be a fungivorous beetle or the fungus that it eats; I don't expect that either group reads this blog), but the principle at work is absolutely no different from making judgments about any physical phenomenon, up to and including the origins of life and the universe itself. There have been cultures in which both beetles and fungi have had religious connotations (the scarab in ancient Egypt, for instance). So what? We're quite certain now that the sun isn't a glowing ball of dung being rolled across the sky by an enormous Coleoptera. The belief that this was the case was revised when evidence came to light that said it wasn't in keeping with reality; at some point, it began to seem more likely that a fellow in a chariot was hauling the sun across the sky. Later, that belief was revised and the idea became prevalent that the sun was a sort of artificial bulb hung in the firmament by a deity with the purpose of lighting up the world for the benefit of humanity. Still later, new evidence forced the revision of that belief and we came to know that the sun is essentially a big hydrogen-based nuclear reactor and that the earth is just another result of the same process that formed it — a by-product, really, since the sun could well have existed without there being an earth or any other planet in our solar system. Stannard's contention, when we cut to the chase, is really a step backward in the process; he's asserting, at least indirectly, that the sun was placed where it is, and the earth where it is, by an intentional act meant to benefit humans. We don't have evidence for this, though, just the contention that if things had been different then, well, things would have been different.

Heck, I'm not a lecturer in physics and I could have told you that. It's just a tautology. There is nothing to tell us, though, that the fact that things could have been different means anything at all. From everything we have actually come to know about the universe, it appears that it's a coincidence that things are the way that they are and that our attempt to insert some meaning involving, even culminating, in our own existence is an example of humankind's phenomenal ability to find patterns in randomness. As Hawking himself pointed out in A Brief History of Time, if things had been different, we wouldn't be here to contemplate it, at least not in the way we are now. At worst, this argument can be part of a larger agenda intended to pull the wool over our eyes in order to control our behavior. I don't know much about Stannard, so I'll give him the benefit of the doubt and guess that his case is the former rather than the latter. The Catholic church, on the other hand, certainly has a lot of rules intended to govern the behavior of its adherents, and I'm inclined to believe that theirs is the second case and that Stannard's talk was given as evidence to legitimize a basis for their social controls based upon, again, an appeal to authority. After all, a religion that posits the infallibility of its leader in "spiritual" matters is certainly based upon such an appeal. I'm unaware of any evidence that following the dictates the Pope increases the chances of getting into heaven. Has anyone come up with a good way of counting yet?

Stannard wasn't the only one who spoke, though.
Ray Guarendi, a clinical pyschologist [sic] and radio show host, said belief in one’s faith is important because everything else in life, including youthful prowess, and strength, is fleeting.

He said he’s amazed that his atheist friends are taking a chance that there is no God...
Ah, Pascal's Wager. I'm almost sorry I didn't go to this conference. So many logical fallacies in so small a space! Guarendi doesn't realize that he's really taking the same chance as his "atheist friends." I mean, I'm amazed that Guarendi is taking the chance that Vishnu won't send him to Raurava (that's a Hindu hell, folks) for his misguided belief in Jehovah! Or maybe his belief in Jesus will land him in the clutches of Angra Mainyu. Sacrifice to Tezcatlipoca NOW!Perhaps by failing to sacrifice the hearts of enemies slain in battle, Guarendi will suffer eternal flaying at the claws of Tezcatlipoca. Pascal's Wager has been around a long time, and it's always the same; it starts with the assumption that one religion is correct and all the other religions, belief systems and philosophies are wrong. Outside the context of a given religion, why should one expect that this is the case? All belief is a matter of personal preference unless it is conditioned by empirical evidence so, in the end, I'm amazed that Guarendi is willing to risk the distinct possibility that his religion is the wrong one. The only other solution to this ramification of Pascal's Wager (Pascal's dilemma?) is to follow every single religion that has ever existed and to embrace every possible belief simultaneously — which is impossible. We'll have to satisfy ourselves with examining hard evidence, then, and hope that if we're wrong about everything that whatever deity turns out to be the right one(s) isn't as vindictive a son-of-a-bitch as Guarendi thinks it must be. Even allowing for the existence of one or more deities, after all, doesn't necessitate that they aren't nice beings who don't spend all their time worrying about beliefs.

I mean, if they went to all this trouble to arrange an entire universe for our benefit, they'd have to be pretty nice beings, wouldn't they? Why even bother in the first place if not? Then again, we might well ask them about the whole human birth canal problem, why female hyenas have a pseudo-penis, and any number of other design flaws we see in this grand scheme of things. If they did indeed create analytical intelligence, they must have meant for it to be used. Perhaps the gods just got bored with each other and needed somebody new to talk to. That in itself would get boring in a hurry if we simply agreed with them on every point. Pascal's Wager seems a bit of tediously dull thought in comparison to the limitless possibilities that I can dream up while sitting in a chair somewhere in Worcester, MA.
The Rev. John Riccardo, a Detroit priest who has a nationally syndicated weekly radio show, offered some reflections before participants were invited to confess their sins. About 50 diocesan priests were on hand to hear confessions, according to an organizer of the conference.
"Forgive me father. It has been over a month since I sacrifice the hearts of my enemies to the Smoking Mirror."
"I think you want the Mayan Warriors Conference, my child. Down the hall, make a left..."

Sphere: Related Content